Case and source map
What the supplied questions test
Every case and lecture question that belongs to this chapter, the concept it tests, and the place in the chapter where you practise it. Lecture coverage, case coverage and original practice are labelled separately.
Case map
- L1 Q1 (p.50)Caspases in thymic involutionPractise in 1.7 knowledge check
- L1 Q2 (p.51)Mitochondrial (intrinsic) apoptosis after denervationPractise in 1.7 knowledge check
- L1 Q3 (p.52)Liquefactive necrosis after strokePractise in Chapter review · stroke case
- L1 Q4 (p.53)Granzyme B in cytotoxic T-cell killingPractise in 1.7 knowledge check
- L1 Q5 (p.54)ATP depletion in early ischemic swellingPractise in 1.4 knowledge check
- L1 Q6 (p.55)Brain atrophy in Alzheimer diseasePractise in 1.2 knowledge check
- L1 Q7 (p.56)Caseous necrosis in tuberculosisPractise in 1.6 knowledge check
- L1 Q8 (p.57)Pyknosis on a Pap smearPractise in 1.4 knowledge check
- L1 Q9 (p.58)Increased gene expression (mRNA) in cardiac hypertrophyPractise in 1.2 knowledge check
- L1 Q10 (p.59)Glandular metaplasia in chronic cystitisPractise in 1.2 knowledge check
- Midterm sim. Q1 (p.1)Pancreatic (enzymatic) fat necrosisPractise in Chapter review
- Midterm sim. Q2 (p.1)Compensatory hypertrophyPractise in Chapter review
- Midterm sim. Q3 (p.1)Reperfusion injuryPractise in 1.5 knowledge check
- Midterm sim. Q4 (p.1)Myocardial coagulative necrosisPractise in One Fact Changes (1.6)
- Midterm sim. Q5 (p.2)Cytochrome c in apoptosisPractise in The Missing Arrow (1.7)
- Midterm sim. Q6 (p.2)Cervical dysplasiaPractise in Almost Twins (1.2)
- Injury simulator (original)Normal, reversible, recovery and irreversible states by severity, duration and tissue; three morphology questionsPractise in Interactive lab (1.4)
- Ch. II Q10 (p.11)Myocardium 2 days after infarction: lost nuclei with neutrophilsTaught in Chapter 2.Also Midterm sim. Q7 (p.3): neutrophils hours to days after a fatal infarct.Practise in Chapter review
- Ch. II Q8 (p.9)Brain infarct one week later: microglia/macrophages, then cavitationTaught in Chapter 2.Q8 asks about one week (answer: microglia); the review item extends the same case to three weeks. Pairs with L1 Q3.Practise in Chapter review
- Ch. II Q17 (p.18)Cervical dysplasia (same stem as Midterm sim. Q6)Chapter 7 dysplasia and invasion.Practise in Chapter review
Sources and notes
Sources
- L1L1 Cell injury.pdf — Cell injury. Cell adaptation. Cell death (lecture slides, 59 pages)Primary source for Lesson 1 content, diagrams and questions 1–10. Page numbers refer to this file.
- SyllabusSyllabus 1 (1).pdf — Pathology course syllabus (2 pages)Defines the midterm scope (Chapters 1–7); Chapter 1 is Lesson 1.
- Midterm sim.Cases for simulation of midterm examination on pathology.pdf (16 pages)Q1–Q6 test Chapter 1 directly (pp. 1–2); Q7 (p. 3) crosses over from Chapter 2.
- Ch. II casesCASES CHAPTER II.pdf (20 pages)Q8 (brain infarct at 1 week, p. 9), Q10 (myocardial infarct at 2 days, p. 11) and Q17 (cervical dysplasia, p. 18) cross over into Chapter 1.
- Ref.Standard references used to verify mechanismsRobbins & Kumar Basic Pathology (cell injury, ischemia, apoptosis, amyloidosis); West's Respiratory Physiology (gas exchange, V/Q, shunt); standard toxicology texts (CO, cyanide, methemoglobinemia).
Course PDFs are not served by this site. Page numbers refer to the supplied files so you can verify claims. Images labelled “Lecture image” are cropped from those files; “Teaching schematic” marks original drawings.
Source notes: where the sources differ or are ambiguous
- Glycolysis and oxygen. Source: “O₂ is crucial for ATP synthesis both in glycolysis and oxidative phosphorylation.” Taught here: Glycolysis makes ATP without using oxygen; oxygen is required only at complex IV for oxidative phosphorylation. Hypoxia shifts cells toward glycolysis because it still works. L1 p.9
- Hypoventilation. Source: lists “respiratory acidosis = retention of CO₂” as a cause of hypoxemia. Taught here: Hypoventilation is the cause: a higher alveolar PCO₂ lowers alveolar PO₂. Respiratory acidosis is the accompanying acid–base finding. L1 p.10
- Atelectasis. Source: grouped with “ventilation problems” among V/Q defects. Taught here: Collapsed alveoli that are still perfused act as a shunt (V/Q ≈ 0), so supplemental oxygen helps little. Partly ventilated (low V/Q) units respond well to oxygen. L1 p.10
- Pulmonary embolism. Source: “perfusion defect… increase in pathologic dead space.” Taught here: Dead space wastes ventilation but does not by itself lower PaO₂. Hypoxemia in PE comes mainly from blood diverted to the remaining lung (low V/Q regions) and shunting. L1 p.10
- Cyanide. Source: “O₂ cannot diffuse into tissue”; bitter almond breath called pathognomonic. Taught here: Oxygen is delivered but cannot be used by cytochrome oxidase, so extraction falls and venous blood stays oxygen-rich. The almond odor is a classic but unreliable clue that many people cannot smell. L1 p.15
- Carbon monoxide colour. Source: cherry-red skin, blood and brain. Taught here: A classic association that is usually postmortem and often absent in living patients; diagnosis relies on carboxyhemoglobin by co-oximetry. L1 p.13
- Glutathione roles. Source: “Glutathione peroxidase neutralizes H₂O₂, hydroxyl, and NAPQI”; NAC “donates cystine”. Taught here: Glutathione peroxidase reduces H₂O₂ and lipid peroxides using GSH. NAPQI is conjugated to GSH (spontaneously and by glutathione S-transferase). No enzyme removes hydroxyl radical; it is prevented by clearing H₂O₂ and binding iron. N-acetylcysteine supplies cysteine for GSH synthesis. L1 p.22
- Amylin. Source: “Amylin (derived from insulin)”. Taught here: Amylin (islet amyloid polypeptide) is co-secreted with insulin by β cells; it is a separate peptide, not a fragment of insulin. L1 p.47
- Vulnerable renal regions. Source: “Renal cortex and medulla”. Taught here: Most vulnerable: the straight segment of the proximal tubule (S3) in the outer medulla and the medullary thick ascending limb, where oxygen tension is low and transport work is high. L1 p.16
- Physiologic free radicals. Source: attributed to cytochrome c during oxidative phosphorylation. Taught here: Electrons leak mainly at complexes I and III and partially reduce oxygen to superoxide. L1 p.20
Brief in the sources, expanded here as supporting context
- Intracellular accumulations appear on the causes slide and in the title; lipid, glycogen, protein and pigment examples in 1.8 are supporting context.
- Autophagy is posed as a question on the atrophy slide; the mechanism in 1.2 is supporting context.
- Regenerative capacity (labile, stable, permanent) is listed on the hyperplasia slide; examples in 1.2 are supporting context.
- High-altitude adaptation is a diagram without text; the explanation in 1.3 is added.
- Immune reactions, genetic and metabolic disorders, nutritional deficiency, aging appear on the causes diagram; 1.1 adds one example each.
- Dysplasia has a one-line definition and the CIN diagram; the cytologic features in 1.2 are added.
- Fibrinoid necrosis and gangrene have short slides; 1.6 keeps to the lecture's examples.
- Apoptosis morphology is four bullet points; the comparison with necrosis in 1.7 is added.
- Fatty change as a reversible-injury finding is not in the lecture and is mentioned only as supporting context.
- Inflammatory cells after infarction come from the Chapter II crossover (CASES_CHAPTER_II.pdf Q8 and Q10) and are kept brief.